Public research repositories
This secondary catalog lists durable public repository metadata. Scholarly selection and interpretation appear on the Work page.
ABG versus VBG Project
active research code
Restricted clinical data are not public.
Weight Loss and OSA Meta-analysis
systematic review and meta-analysis · Stata
Study-level extraction data only; no patient-level data.
MIMIC-CXR Bilateral Opacity Benchmark
research software · Python
Restricted MIMIC-CXR data are not distributed; credentialed access is required.
Bariatric Surgery and CPAP Analysis
legacy analysis code · Python
Restricted clinical sleep-center data are not public.
Clinical Talks
teaching site · Quarto
Teaching materials only.
Inpatient Emergency Leadership Seminar Analysis
educational evaluation · R and Quarto
No trainee identifiers are published.
Confidence Curves and Likelihood
statistical visualization tool · Python
No clinical data.
Electronic Health Record-derived CPAP Outcomes
reproducible analysis · Python
Restricted EHR-derived data are not public.
Central Sleep Apnea Legacy Python Workflow
legacy analysis code · Python
Restricted clinical data are not public; only synthetic fixtures are included.
Central Sleep Apnea CPAP Prescribing
reproducible analysis · Stata
Restricted clinical sleep-center data are not public.
Pulmonary Artery Enlargement and Mortality
reproducible analysis
Restricted imaging and EHR data are not public.
Diagnostic Chat Entropy
research code · Python
No private chat transcripts are published.
PCCM Fellows Statistics Workshop
teaching site
Teaching materials only.
Forensic Meta-Science
Research toolkit for forensic checks and source-traceable medical-study review. · R, Python, and Quarto
Public replication data; consult source licenses.
Hickam's Dictum
reproducible analysis · Stata
See the repository for the public analysis data and reuse terms.
Hypercapnic Respiratory Failure Case Definitions
reproducible analysis · Stata
Restricted EHR-derived data are not public.
Hypercapnia Presenting-Concern NLP Study
reproducible NLP analysis · Python
Restricted MIMIC-IV data are not public; access requires PhysioNet credentials and applicable approvals.
Hypercapnia Trial Adverse Events
reproducible analysis · Jupyter Notebook
Public trial-registry-derived data only.
Introduction to Clinical Research
teaching site
Teaching materials only.
LLM Estimation of Likelihood Ratios
research notebooks · Jupyter Notebook
Generated model outputs and literature-derived comparisons only.
Native Hawaiian and Pacific Islander OSA Burden
reproducible analysis · Stata
Restricted clinical data are not public.
Diagnostic Reasoning Notebooks
interactive teaching notebooks and reproducible narrated-animation source · Python, Jupyter Notebook, and Manim
Synthetic teaching examples and animation source only; no patient data. Final narrated movies are not public.
Post-Acute Ventilator Weaning and Discharge Outcomes in Cervical Spinal Cord Injury
reproducible analysis · Stata
Restricted EHR data are not public.
Parallel Circulation Oxygen Explorer
research software · Python
Educational simulations only; not clinically validated.
Sodium Change Probability
clinical teaching tool · Python
No patient data.
SOFA Respiratory Score Simulation
simulation · Python
Simulation data only.
Splenectomy and Pulmonary Embolism
reproducible analysis
Restricted clinical data are not public.
Stata Codex Skills
developer tool · Python
No clinical data.
State Veterans Home Goals-of-Care Analysis
legacy analysis code · Python
Sensitive goals-of-care data are not public.
Stewart-Light Acid-Base Visualization
clinical teaching tool · Python
No patient data.
Transcutaneous CO2 Accuracy
simulation and analysis · Python
Simulation outputs only; no patient-level data are published.
Tele-critical Care Transfers During COVID
research code · Stata
Restricted clinical operations data are not public.
TriNetX Preprocessing
data-processing tool · Python
No restricted export rows are published.
TriNetX Hypercapnia Analysis
legacy analysis code · Python
No restricted row-level TriNetX data are published.
Code Blue and Rapid Response Leadership
teaching site · Quarto
Educational materials only.
VBG Acid–Base Explorer
research software · Python
Public research preview only; do not enter patient information.
Immersive Virtual Reality in the ICU
mixed-methods analysis · Stata
Study materials and de-identified outputs only.
Wald inference tools
research software · Python
Statistical examples only; no clinical data.